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%protease% %peptides-in-ranges% %motifed-in-range% Sequence  
Motive: %motifs-list%
%seq-with-saved-motifs-highlighted%

PeptiCut

This tool finds the optimum protease to be used in MassSpec analysis for a given protein sequence, by making sure that maximum number of peptides that are longer than 5 and shorter than 40 amino acids are produced (optimum peptides).
Also, upon query of a motif of interest (MOI), PeptiCut would sort the protease that wouldn't cut at the MOI.
The output is a list sorted by number of optimum peptides (P) and then number of preserved motifs (M).
Particularly useful for phosphomapping analysis.
To analyze protein sequences by regular expression motifs use BASALT.


Motif:


Sequence: