Protein G.U.R.U. - Global e-Utility and Resource Unit for Protein Research

    

%protease% %peptides-in-ranges% %motifed-in-range% Sequence   Motive: %motifs-list% %seq-with-saved-motifs-highlighted% PeptiCut This tool finds the optimum protease to be used in MassSpec analysis for a given protein sequence, by making sure that maximum number of peptides that are longer than 5 and shorter than 40 amino acids are produced (optimum peptides). Also, upon query of a motif of interest (MOI), PeptiCut would sort the protease that wouldn't cut at the MOI. The output is a list sorted by number of optimum peptides (P) and then number of preserved motifs (M). Particularly useful for phosphomapping analysis. Motif: Sequence: Sorted by peptides in range, then motifs in range. Show All Sequences Protease P M