This tool finds the optimum protease to be used in MassSpec analysis
for a given protein sequence, by making sure that maximum number of peptides
that are longer than 5 and shorter than 40 amino acids are produced (optimum peptides).
Also, upon query of a motif of interest (MOI), PeptiCut would sort the protease
that wouldn't cut at the MOI.
The output is a list sorted by number of optimum peptides (P) and then number of preserved motifs (M).
Particularly useful for phosphomapping analysis.
To analyze protein sequences by regular expression motifs use BASALT.